cano-wgMLST_BacCompare
(A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis)
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Step 3: Results of discriminatory loci refinement and wgMLST_tree
 
Job ID:
S.Heidelberg_wgMLST_tree
Number of uploaded genomes:
0
Results of whole-genome extraction (step 2):
Threshold for refining the discriminatory loci:
 
Robinson-Foulds (RF) distance:
Dendrogram:
wgMLST tree
scheme (-1 loci)
cano-wgMLST tree
_ scheme (0 loci)
Download newick tree
Download newick tree
 
Heatmap of the 0 highly discriminatory loci:
Download heatmap profile
wgMLST schemes:
    wgMLST schemes    (-1 loci),
  _ (0 highly discriminatory loci)
 
  #      Locus    Splits  Gene_name  Occ(%) Annotation
 
Downloads:
     Locus list: locus_list.xls
     Presence/absence matrix: locus_profile.xls
     Allele matrix: allele_profile.xls
     Locus sequences: locus_seq.fa
     Distance matrix: distance_matrix.xls
     Dendrogram: wgMLST_tree.newick (FigTree for viewing), wgMLST_tree.pdf
 
 
 
Copyright © 2019 Institute of Medical Science and Technology, National Sun Yat-sen University, Taiwan. Contact
YY Liu, JW Lin and CC Chen (2019) cano-wgMLST_BacCompare: A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis. Front. Microbiol. 10:1687. doi: 10.3389/fmicb.2019.01687